Regulating Transcription

Transcription Factors

Genes are expressed by transcription and translation. In eukaryotic cells, not all of the genes are expressed in a specialised cell. Gene expression is controlled by transcription factors.

Function

Transcription factors are proteins that control gene expression by stimulating or inhibiting the transcription of target genes.
Transcription factors are produced in the cytoplasm and move to the nucleus.
In the nucleus, transcription factors bind to a specific region of DNA to stimulate or inhibit the gene.

Activators

Transcription factors that stimulate gene expression are called activators.
Activators promote the transcription of the genes by interacting with an enzyme called RNA polymerase and allowing it to bind to DNA.

Repressors

Transcription factors that inhibit gene expression are called repressors.
Repressors prevent the transcription of genes by stopping RNA polymerase from binding to DNA.

Hormones

Transcription can also be regulated by hormones. There are two types of hormone involved:

Peptide hormones

Peptide hormones bind to the cell surface membrane and trigger a secondary messenger response.
The secondary messenger will lead to the activation or inhibition of transcription of some genes.

Lipid-soluble steroid hormones

Lipid-soluble steroid hormones can pass through the phospholipid membrane.
Steroid hormones interact directly with DNA to promote or inhibit gene expression.
- E.g. Oestrogen.

Oestrogen

Oestrogen is a lipid-soluble steroid hormone that can enter the cell and directly interact with DNA to initiate gene transcription. The steps involved are:

1) Enter the cell

Oestrogen enters the cytoplasm of the cell through the cell surface membrane.
Oestrogen is lipid-soluble so it can pass through the phospholipid bilayer.

2) Bind to transcription factors

Oestrogen binds to receptors on transcription factors in the cytoplasm.
Binding of oestrogen causes the transcription factors to change shape.
The transcription factors form a receptor-hormone complex that can now enter the nucleus.

3) Bind to DNA

The receptor-hormone complex binds to the promoter region of the DNA.
Binding to DNA activates transcription.
This stimulates protein synthesis.

1Biological Molecules

1.1Monomers & Polymers

1.1.1Monomers & Polymers

1.1.2Condensation & Hydrolysis Reactions

1.2Carbohydrates

1.2.1Structure of Carbohydrates

1.2.2Types of Polysaccharides

1.2.3End of Topic Test - Monomers, Polymers and Carbs

1.2.4Exam-Style Question - Carbohydrates

1.2.5A-A* (AO3/4) - Carbohydrates

1.3Lipids

1.3.1Triglycerides & Phospholipids

1.3.2Types of Fatty Acids

1.3.3Testing for Lipids

1.3.4Exam-Style Question - Fats

1.3.5A-A* (AO3/4) - Lipids

1.4Proteins

1.4.1The Peptide Chain

1.4.2Investigating Proteins

1.4.3Primary & Secondary Protein Structure

1.4.4Tertiary & Quaternary Protein Structure

1.4.5Enzymes

1.4.6Factors Affecting Enzyme Activity

1.4.7Enzyme-Controlled Reactions

1.4.8End of Topic Test - Lipids & Proteins

1.4.9A-A* (AO3/4) - Enzymes

1.4.10A-A* (AO3/4) - Proteins

1.4.11Diagnostic Misconceptions - Enzyme Inhibitors

1.5Nucleic Acids

1.5.1DNA & RNA

1.5.2Nucleotides

1.5.3Polynucleotides

1.5.4DNA Replication

1.5.5Exam-Style Question - Nucleic Acids

1.5.6A-A* (AO3/4) - Nucleic Acids

1.6ATP

1.6.1Structure of ATP

1.6.2Hydrolysis of ATP

1.6.3Resynthesis of ATP

1.6.4End of Topic Test - Nucleic Acids & ATP

1.7Water

1.7.1Importance of Water

1.7.2Structure of Water

1.7.3Properties of Water

1.7.4A-A* (AO3/4) - Water

1.8Inorganic Ions

1.8.1Inorganic Ions

1.8.2End of Topic Test - Water & Inorganic Ions

2Cells

2.1Cell Structure

2.1.1Introduction to Cells

2.1.2Eukaryotic Cells & Organelles

2.1.3Eukaryotic Cells & Organelles 2

2.1.4Prokaryotes

2.1.5A-A* (AO3/4) - Organelles

2.1.6Methods of Studying Cells

2.1.7Microscopes

2.1.8End of Topic Test - Cell Structure

2.1.9Exam-Style Question - Cells

2.1.10A-A* (AO3/4) - Cells

2.2Mitosis & Cancer

2.2.1Mitosis

2.2.2Stages of Mitosis

2.2.3Investigating Mitosis

2.2.4Cancer

2.2.5A-A* (AO3/4) - The Cell Cycle

2.3Transport Across Cell Membrane

2.3.1Cell Membrane Structure

2.3.2A-A* (AO3/4) - Membrane Structure

2.3.3Diffusion

2.3.4Osmosis

2.3.5Active Transport

2.3.6End of Topic Test - Mitosis, Cancer & Transport

2.3.7Exam-Style Question - Membranes

2.3.8A-A* (AO3/4) - Membranes & Transport

2.3.9A-A*- Mitosis, Cancer & Transport

2.4Cell Recognition & the Immune System

2.4.1Immune System

2.4.2Phagocytosis

2.4.3T Lymphocytes

2.4.4B Lymphocytes

2.4.5Antibodies

2.4.6Primary & Secondary Response

2.4.7Vaccines

2.4.8HIV

2.4.9Ethical Issues

2.4.10End of Topic Test - Immune System

2.4.11Exam-Style Question - Immune System

2.4.12A-A* (AO3/4) - Immune System

2.4.13Diagnostic Misconceptions - Humoral vs Cellular

3Substance Exchange

3.1Surface Area to Volume Ratio

3.1.1Size & Surface Area

3.1.2A-A* (AO3/4) - Cell Size

3.2Gas Exchange

3.2.1Single-Celled Organisms

3.2.2Multicellular Organisms

3.2.3Control of Water Loss

3.2.4Human Gas Exchange

3.2.5Ventilation

3.2.6Dissection

3.2.7Measuring Gas Exchange

3.2.8Lung Disease

3.2.9Lung Disease Data

3.2.10End of Topic Test - Gas Exchange

3.2.11A-A* (AO3/4) - Gas Exchange

3.3Digestion & Absorption

3.3.1Overview of Digestion

3.3.2Digestion in Mammals

3.3.3Absorption

3.3.4End of Topic Test - Substance Exchange & Digestion

3.3.5A-A* (AO3/4) - Substance Ex & Digestion

3.4Mass Transport

3.4.1Haemoglobin

3.4.2Oxygen Transport

3.4.3The Circulatory System

3.4.4The Heart

3.4.5Blood Vessels

3.4.6Cardiovascular Disease

3.4.7Heart Dissection

3.4.8Xylem

3.4.9Phloem

3.4.10Investigating Plant Transport

3.4.11End of Topic Test - Mass Transport

3.4.12A-A* (AO3/4) - Mass Transport

3.4.13Diagnostic Misconceptions - Concentration Gradient

3.4.14Diagnostic Misconceptions - Cardiac Cycle

3.4.15Diagnostic Misconceptions - Carrying Capacity

3.4.16Diagnostic Misconceptions - Translocation

4Genetic Information & Variation

4.1DNA, Genes & Chromosomes

4.1.1DNA

4.1.2Genes

4.1.3Non-Coding Genes

4.1.4The Genetic Code

4.1.5A-A* (AO3/4) - DNA

4.2DNA & Protein Synthesis

4.2.1Protein Synthesis

4.2.2Transcription & Translation

4.2.3End of Topic Test - DNA, Genes & Protein Synthesis

4.2.4Exam-Style Question - Protein Synthesis

4.2.5A-A* (AO3/4) - Coronavirus Translation

4.2.6A-A* (AO3/4) - Transcription

4.2.7A-A* (AO3/4) - Translation

4.3Mutations & Meiosis

4.3.1Mutations

4.3.2Meiosis

4.3.3A-A* (AO3/4) - Meiosis

4.3.4Meiosis vs Mitosis

4.3.5End of Topic Test - Mutations, Meiosis

4.3.6A-A* (AO3/4) - DNA,Genes, CellDiv & ProtSynth

4.3.7Diagnostic Misconceptions - Meiosis vs Mitosis

4.4Genetic Diversity & Adaptation

4.4.1Genetic Diversity

4.4.2Natural Selection

4.4.3A-A* (AO3/4) - Natural Selection

4.4.4Adaptations

4.4.5Investigating Natural Selection

4.4.6End of Topic Test - Genetic Diversity & Adaptation

4.4.7A-A* (AO3/4) - Genetic Diversity & Adaptation

4.5Species & Taxonomy

4.5.1Courtship Behaviour

4.5.2Phylogeny

4.5.3Classification

4.5.4DNA Technology

4.5.5A-A* (AO3/4) - Species & Taxonomy

4.6Biodiversity Within a Community

4.6.1Biodiversity

4.6.2Index of diversity

4.6.3Agriculture

4.6.4End of Topic Test - Species,Taxonomy& Biodiversity

4.6.5A-A* (AO3/4) - Species,Taxon&Biodiversity

4.7Investigating Diversity

4.7.1Genetic Diversity

4.7.2Quantitative Investigation

5Energy Transfers (A2 only)

5.1Photosynthesis

5.1.1Overview of Photosynthesis

5.1.2Photoionisation of Chlorophyll

5.1.3Production of ATP & Reduced NADP

5.1.4Cyclic Photophosphorylation

5.1.5Light-Independent Reaction

5.1.6A-A* (AO3/4) - Photosynthesis Reactions

5.1.7Limiting Factors

5.1.8Photosynthesis Experiments

5.1.9End of Topic Test - Photosynthesis

5.1.10A-A* (AO3/4) - Photosynthesis

5.2Respiration

5.2.1Overview of Respiration

5.2.2Anaerobic Respiration

5.2.3A-A* (AO3/4) - Anaerobic Respiration

5.2.4The Link Reaction

5.2.5The Krebs Cycle

5.2.6Oxidative Phosphorylation

5.2.7Respiration Experiments

5.2.8End of Topic Test - Respiration

5.2.9A-A* (AO3/4) - Respiration

5.2.10Diagnostic Misconceptions - Aerobic vs Anaerobic

5.3Energy & Ecosystems

5.3.1Biomass

5.3.2Production & Productivity

5.3.3Agricultural Practices

5.4Nutrient Cycles

5.4.1Nitrogen Cycle

5.4.2Phosphorous Cycle

5.4.3Fertilisers & Eutrophication

5.4.4End of Topic Test - Nutrient Cycles

5.4.5A-A* (AO3/4) - Energy,Ecosystems&NutrientCycles

6Responding to Change (A2 only)

6.1Nervous Communication

6.1.1Survival

6.1.2Plant Responses

6.1.3Animal Responses

6.1.4Reflexes

6.1.5End of Topic Test - Reflexes, Responses & Survival

6.1.6Receptors

6.1.7The Human Retina

6.1.8Control of Heart Rate

6.1.9End of Topic Test - Receptors, Retina & Heart Rate

6.2Nervous Coordination

6.2.1Neurones

6.2.2Action Potentials

6.2.3Speed of Transmission

6.2.4End of Topic Test - Neurones & Action Potentials

6.2.5Synapses

6.2.6Types of Synapse

6.2.7Medical Application

6.2.8End of Topic Test - Synapses

6.2.9A-A* (AO3/4) - Nervous Comm&Coord

6.3Muscle Contraction

6.3.1Skeletal Muscle

6.3.2Sliding Filament Theory

6.3.3Contraction

6.3.4Slow & Fast Twitch Fibres

6.3.5End of Topic Test - Muscles

6.3.6A-A* (AO3/4) - Muscle Contraction

6.4Homeostasis

6.4.1Overview of Homeostasis

6.4.2Blood Glucose Concentration

6.4.3Controlling Blood Glucose Concentration

6.4.4End of Topic Test - Blood Glucose

6.4.5Primary & Secondary Messengers

6.4.6Diabetes Mellitus

6.4.7Measuring Glucose Concentration

6.4.8Osmoregulation

6.4.9Controlling Blood Water Potential

6.4.10ADH

6.4.11End of Topic Test - Diabetes & Osmoregulation

6.4.12A-A* (AO3/4) - Homeostasis

6.4.13Diagnostic Misconceptions - Effect of ADH

7Genetics & Ecosystems (A2 only)

7.1Genetics

7.1.1Key Terms in Genetics

7.1.2Inheritance

7.1.3Linkage

7.1.4Multiple Alleles & Epistasis

7.1.5Chi-Squared Test

7.1.6End of Topic Test - Genetics

7.1.7A-A* (AO3/4) - Genetics

7.1.8Diagnostic Misconceptions - Dihybrid Inheritance

7.1.9Diagnostic Misconceptions - Sex Linkage

7.2Populations

7.2.1Populations

7.2.2Hardy-Weinberg Principle

7.3Evolution

7.3.1Variation

7.3.2Natural Selection & Evolution

7.3.3End of Topic Test - Populations & Evolution

7.3.4Types of Selection

7.3.5Types of Selection Summary

7.3.6Overview of Speciation

7.3.7Causes of Speciation

7.3.8Diversity

7.3.9End of Topic Test - Selection & Speciation

7.3.10A-A* (AO3/4) - Populations & Evolution

7.3.11Diagnostic Misconceptions - Types of Speciation

7.4Populations in Ecosystems

7.4.1Overview of Ecosystems

7.4.2Niche

7.4.3Population Size

7.4.4Investigating Population Size

7.4.5End of Topic Test - Ecosystems & Population Size

7.4.6Succession

7.4.7Conservation

7.4.8End of Topic Test - Succession & Conservation

7.4.9A-A* (AO3/4) - Ecosystems

8The Control of Gene Expression (A2 only)

8.1Mutation

8.1.1Mutations

8.1.2Effects of Mutations

8.1.3Causes of Mutations

8.1.4Diagnostic Misconceptions - Gene Expression

8.2Gene Expression

8.2.1Stem Cells

8.2.2Stem Cells in Disease

8.2.3End of Topic Test - Mutation & Gene Epression

8.2.4A-A* (AO3/4) - Mutation & Stem Cells

8.2.5Regulating Transcription

8.2.6Epigenetics

8.2.7Epigenetics & Disease

8.2.8Regulating Translation

8.2.9Experimental Data

8.2.10End of Topic Test - Transcription & Translation

8.2.11Tumours

8.2.12Correlations & Causes

8.2.13Prevention & Treatment

8.2.14End of Topic Test - Cancer

8.2.15A-A* (AO3/4) - Gene Expression & Cancer

8.3Genome Projects

8.3.1Using Genome Projects

8.4Gene Technology

8.4.1Recombinant DNA

8.4.2Producing Fragments

8.4.3Amplification

8.4.4End of Topic Test - Genome Project & Amplification

8.4.5Using Recombinant DNA

8.4.6Medical Diagnosis

8.4.7Genetic Fingerprinting

8.4.8End of Topic Test - Gene Technologies

8.4.9A-A* (AO3/4) - Gene Technology

9Mathematical Skills

9.1Mathematical Skills

9.1.1Diagnostic Misconceptions - Converting Units

9.1.2Diagnostic Misconceptions - Correct Hypothesis

9.1.3Diagnostic Misconceptions - Interpret Hypothesis

9.1.4Diagnostic Misconceptions - Calculate Uncertainty

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