Light-Dependent Reaction

Photoionisation of Chlorophyll

The first step of the light-dependent reaction is the absorption of light energy by chlorophyll. This causes photoionisation, which is the release of electrons.

Light absorption

Light energy is absorbed by chlorophyll in the photosystems. This is the first step in photosynthesis.
Absorbing light energy excites the electrons within the photosystem.
The electrons are now in a more excited state. This causes them to be released from the chlorophyll.
Chlorophyll is now considered to be photoionised.

Energy from photoionisation

The photoionisation of chlorophyll also results in a release of energy.
This energy is used in photosynthesis to drive three reactions:
- Photophosphorylation - production of ATP from ADP and inorganic phosphate.
- Reduction - production of reduced NADPH from NADP.
- Photolysis - splitting of water into protons, electrons and oxygen.
These three reactions are necessary for photosynthesis to take place.

Production of ATP and Reduced NADP

During the light-dependent reaction, ATP and reduced NADP are produced. In this process electrons are transferred down the electron transfer chain and protons pass across the membranes of chloroplasts.

Electron transport chain

Light energy excites electrons in chlorophyll and the electrons are moved to a higher energy level (they are high-energy electrons).
High-energy electrons are released from the chlorophyll and transferred to an electron carrier.
Electron carriers are proteins located in the thylakoid membranes.
When high-energy electrons are released they are transferred along a chain of electron carriers.
The series of electron carriers is called the electron transport chain (ETC).

The proton gradient

As the electrons move down the ETC, they lose energy.
This energy pumps protons from the stroma into the thylakoids. The protons are being transported against their concentration gradient and this requires energy.
As protons build up inside the thylakoids, a proton gradient forms across the thylakoid membrane because the concentration of protons inside the thylakoids is greater than in the stroma.

Chemiosmosis

The protons diffuse down the concentration gradient across the thylakoid membrane through the ATP synthase enzyme.
As protons diffuse through the ATP synthase, energy is released.
This energy converts ADP and inorganic phosphate to ATP.
This process is called chemiosmosis.

Reduced NADP

When light energy is absorbed, high-energy electrons are released.
Some electrons are transferred directly to NADP. They are not passed along the ETC.
The electrons react with a proton in the stroma to produce reduced NADP.

Photolysis

Electrons can be replaced by photolysis.
In this process, light energy splits water into protons, electrons and oxygen.
The electrons can then replace those released when light is absorbed.

Non-cyclic photophosphorylation

Non-cyclic photophosphorylation produces reduced NADP and ATP.
- Reduced NADP is produced when light is absorbed by PSI.
Electrons are not recycled in non-cyclic photophosphorylation.
Both types of photophosphorylation produce ATP
The ETC is located in the thylakoid membrane.

Cyclic Photophosphorylation

There are two types of photophosphorylation that take place during the light-dependent reaction: cyclic and non-cyclic photophosphorylation. Here, we will look at cyclic photophosphorylation.

Absorption of light by PSI

Cyclic photophosphorylation only involves PSI.
The process is initiated when light energy is absorbed by PSI.
Light energy excites electrons in the chlorophyll of PSI and the electrons are moved to a higher energy level (they are high-energy electrons).
This is photoionisation of chlorophyll.

Electron transport chain

High-energy electrons are released from the chlorophyll and transferred to an electron carrier.
The electrons are transferred along a chain of electron carriers in the electron transport chain (ETC).
Unlike in non-cyclic photophosphorylation, the electrons are not transferred from PSII to PSI.
Instead the electrons cycle continuously through the electron carriers to PSI.

The proton gradient

As the electrons move down the ETC, they lose energy.
This energy pumps protons from the stroma into the thylakoids.
- This is the same as in non-cyclic photophosphorylation.
As protons build up inside the thylakoids, a proton gradient forms across the thylakoid membrane.

Chemiosmosis

The protons diffuse down the concentration gradient across the thylakoid membrane through the ATP synthase enzyme.
As protons diffuse through the ATP synthase, energy is released.
This energy converts ADP and inorganic phosphate to ATP.
This process is called chemiosmosis.

Comparing cyclic and non-cyclic

In cyclic photophosphorylation:
- ATP is produced.
- No reduced NADP is produced.
- Electrons are continuously recycled.
- Photolysis does not take place.
In non-cyclic photophosphorylation:
- ATP and reduced NADP are produced.
- Electrons in PSII are replaced by photolysis.

1Biological Molecules

1.1Monomers & Polymers

1.1.1Monomers & Polymers

1.1.2Condensation & Hydrolysis Reactions

1.2Carbohydrates

1.2.1Structure of Carbohydrates

1.2.2Types of Polysaccharides

1.2.3End of Topic Test - Monomers, Polymers and Carbs

1.2.4Exam-Style Question - Carbohydrates

1.2.5A-A* (AO3/4) - Carbohydrates

1.3Lipids

1.3.1Triglycerides & Phospholipids

1.3.2Types of Fatty Acids

1.3.3Testing for Lipids

1.3.4Exam-Style Question - Fats

1.3.5A-A* (AO3/4) - Lipids

1.4Proteins

1.4.1The Peptide Chain

1.4.2Investigating Proteins

1.4.3Primary & Secondary Protein Structure

1.4.4Tertiary & Quaternary Protein Structure

1.4.5Enzymes

1.4.6Factors Affecting Enzyme Activity

1.4.7Enzyme-Controlled Reactions

1.4.8End of Topic Test - Lipids & Proteins

1.4.9A-A* (AO3/4) - Enzymes

1.4.10A-A* (AO3/4) - Proteins

1.5Nucleic Acids

1.5.1DNA & RNA

1.5.2Polynucleotides

1.5.3DNA Replication

1.5.4Exam-Style Question - Nucleic Acids

1.5.5A-A* (AO3/4) - Nucleic Acids

1.6ATP

1.6.1Structure of ATP

1.6.2End of Topic Test - Nucleic Acids & ATP

1.7Water

1.7.1Structure & Function of Water

1.7.2A-A* (AO3/4) - Water

1.8Inorganic Ions

1.8.1Inorganic Ions

1.8.2End of Topic Test - Water & Inorganic Ions

2Cells

2.1Cell Structure

2.1.1Introduction to Cells

2.1.2Eukaryotic Cells & Organelles

2.1.3Eukaryotic Cells & Organelles 2

2.1.4Prokaryotes

2.1.5A-A* (AO3/4) - Organelles

2.1.6Methods of Studying Cells

2.1.7Microscopes

2.1.8End of Topic Test - Cell Structure

2.1.9Exam-Style Question - Cells

2.1.10A-A* (AO3/4) - Cells

2.2Mitosis & Cancer

2.2.1Mitosis

2.2.2Investigating Mitosis

2.2.3Cancer

2.2.4A-A* (AO3/4) - The Cell Cycle

2.3Transport Across Cell Membrane

2.3.1Cell Membrane Structure

2.3.2A-A* (AO3/4) - Membrane Structure

2.3.3Diffusion

2.3.4Osmosis

2.3.5Active Transport

2.3.6End of Topic Test - Mitosis, Cancer & Transport

2.3.7Exam-Style Question - Membranes

2.3.8A-A* (AO3/4) - Membranes & Transport

2.3.9A-A*- Mitosis, Cancer & Transport

2.4Cell Recognition & the Immune System

2.4.1Immune System

2.4.2The Immune Response

2.4.3Antibodies

2.4.4Primary & Secondary Response

2.4.5Vaccines

2.4.6HIV

2.4.7Ethical Issues

2.4.8End of Topic Test - Immune System

2.4.9Exam-Style Question - Immune System

2.4.10A-A* (AO3/4) - Immune System

3Substance Exchange

3.1Surface Area to Volume Ratio

3.1.1Size & Surface Area

3.1.2A-A* (AO3/4) - Cell Size

3.2Gas Exchange

3.2.1Single-Celled Organisms

3.2.2Multicellular Organisms

3.2.3Control of Water Loss

3.2.4Human Gas Exchange

3.2.5Ventilation

3.2.6Dissection

3.2.7Measuring Gas Exchange

3.2.8Lung Disease

3.2.9Lung Disease Data

3.2.10End of Topic Test - Gas Exchange

3.2.11A-A* (AO3/4) - Gas Exchange

3.3Digestion & Absorption

3.3.1Overview of Digestion

3.3.2Digestion in Mammals

3.3.3Absorption

3.3.4End of Topic Test - Substance Exchange & Digestion

3.3.5A-A* (AO3/4) - Substance Ex & Digestion

3.4Mass Transport

3.4.1Haemoglobin

3.4.2Oxygen Transport

3.4.3The Circulatory System

3.4.4The Heart

3.4.5Blood Vessels

3.4.6Cardiovascular Disease

3.4.7Heart Dissection

3.4.8Xylem

3.4.9Phloem

3.4.10Investigating Plant Transport

3.4.11End of Topic Test - Mass Transport

3.4.12A-A* (AO3/4) - Mass Transport

4Genetic Information & Variation

4.1DNA, Genes & Chromosomes

4.1.1DNA

4.1.2Genes

4.1.3A-A* (AO3/4) - DNA

4.2DNA & Protein Synthesis

4.2.1Protein Synthesis

4.2.2Transcription & Translation

4.2.3End of Topic Test - DNA, Genes & Protein Synthesis

4.2.4Exam-Style Question - Protein Synthesis

4.2.5A-A* (AO3/4) - Coronavirus Translation

4.2.6A-A* (AO3/4) - Transcription

4.2.7A-A* (AO3/4) - Translation

4.3Mutations & Meiosis

4.3.1Mutations

4.3.2Meiosis

4.3.3A-A* (AO3/4) - Meiosis

4.3.4Meiosis vs Mitosis

4.3.5End of Topic Test - Mutations, Meiosis

4.3.6A-A* (AO3/4) - DNA,Genes, CellDiv & ProtSynth

4.4Genetic Diversity & Adaptation

4.4.1Genetic Diversity

4.4.2Natural Selection

4.4.3A-A* (AO3/4) - Natural Selection

4.4.4Adaptations

4.4.5Investigating Natural Selection

4.4.6End of Topic Test - Genetic Diversity & Adaptation

4.4.7A-A* (AO3/4) - Genetic Diversity & Adaptation

4.5Species & Taxonomy

4.5.1Classification

4.5.2DNA Technology

4.5.3A-A* (AO3/4) - Species & Taxonomy

4.6Biodiversity Within a Community

4.6.1Biodiversity

4.6.2Agriculture

4.6.3End of Topic Test - Species,Taxonomy& Biodiversity

4.6.4A-A* (AO3/4) - Species,Taxon&Biodiversity

4.7Investigating Diversity

4.7.1Genetic Diversity

4.7.2Quantitative Investigation

5Energy Transfers (A2 only)

6Responding to Change (A2 only)

6.1Nervous Communication

6.1.1Survival

6.1.2Plant Responses

6.1.3Animal Responses

6.1.4Reflexes

6.1.5End of Topic Test - Reflexes, Responses & Survival

6.1.6Receptors

6.1.7The Human Retina

6.1.8Control of Heart Rate

6.1.9End of Topic Test - Receptors, Retina & Heart Rate

6.2Nervous Coordination

6.2.1Neurones

6.2.2Action Potentials

6.2.3Speed of Transmission

6.2.4End of Topic Test - Neurones & Action Potentials

6.2.5Synapses

6.2.6Types of Synapse

6.2.7Medical Application

6.2.8End of Topic Test - Synapses

6.2.9A-A* (AO3/4) - Nervous Comm&Coord

6.3Muscle Contraction

6.3.1Skeletal Muscle

6.3.2Sliding Filament Theory

6.3.3Contraction

6.3.4Slow & Fast Twitch Fibres

6.3.5End of Topic Test - Muscles

6.3.6A-A* (AO3/4) - Muscle Contraction

6.4Homeostasis

6.4.1Overview of Homeostasis

6.4.2Blood Glucose Concentration

6.4.3Controlling Blood Glucose Concentration

6.4.4End of Topic Test - Blood Glucose

6.4.5Primary & Secondary Messengers

6.4.6Diabetes Mellitus

6.4.7Measuring Glucose Concentration

6.4.8Osmoregulation

6.4.9Controlling Blood Water Potential

6.4.10ADH

6.4.11End of Topic Test - Diabetes & Osmoregulation

6.4.12A-A* (AO3/4) - Homeostasis

7Genetics & Ecosystems (A2 only)

7.1Genetics

7.1.1Key Terms in Genetics

7.1.2Inheritance

7.1.3Linkage

7.1.4Multiple Alleles & Epistasis

7.1.5Chi-Squared Test

7.1.6End of Topic Test - Genetics

7.1.7A-A* (AO3/4) - Genetics

7.2Populations

7.2.1Populations

7.2.2Hardy-Weinberg Principle

7.3Evolution

7.3.1Variation

7.3.2Natural Selection & Evolution

7.3.3End of Topic Test - Populations & Evolution

7.3.4Types of Selection

7.3.5Types of Selection Summary

7.3.6Overview of Speciation

7.3.7Causes of Speciation

7.3.8Diversity

7.3.9End of Topic Test - Selection & Speciation

7.3.10A-A* (AO3/4) - Populations & Evolution

7.4Populations in Ecosystems

7.4.1Overview of Ecosystems

7.4.2Niche

7.4.3Population Size

7.4.4Investigating Population Size

7.4.5End of Topic Test - Ecosystems & Population Size

7.4.6Succession

7.4.7Conservation

7.4.8End of Topic Test - Succession & Conservation

7.4.9A-A* (AO3/4) - Ecosystems

8The Control of Gene Expression (A2 only)

8.1Mutation

8.1.1Mutations

8.1.2Effects of Mutations

8.1.3Causes of Mutations

8.2Gene Expression

8.2.1Stem Cells

8.2.2Stem Cells in Disease

8.2.3End of Topic Test - Mutation & Gene Epression

8.2.4A-A* (AO3/4) - Mutation & Stem Cells

8.2.5Regulating Transcription

8.2.6Epigenetics

8.2.7Epigenetics & Disease

8.2.8Regulating Translation

8.2.9Experimental Data

8.2.10End of Topic Test - Transcription & Translation

8.2.11Tumours

8.2.12Correlations & Causes

8.2.13Prevention & Treatment

8.2.14End of Topic Test - Cancer

8.2.15A-A* (AO3/4) - Gene Expression & Cancer

8.3Genome Projects

8.3.1Using Genome Projects

8.4Gene Technology

8.4.1Recombinant DNA

8.4.2Producing Fragments

8.4.3Amplification

8.4.4End of Topic Test - Genome Project & Amplification

8.4.5Using Recombinant DNA

8.4.6Medical Diagnosis

8.4.7Genetic Fingerprinting

8.4.8End of Topic Test - Gene Technologies

8.4.9A-A* (AO3/4) - Gene Technology

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