6.7.1

Amino Acids (A2 Only)

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Amino Acids

There are about 20 naturally-occurring amino acids in animal cells.

Amino acids

Amino acids

  • Amino acids have the general formula RCH(NH2)COOH.
  • Amino acids contain an acidic group (carboxylic acid) and a basic group (amine) in the same molecule.
    • The -NH2 group is on the carbon next to the -COOH group and so they are known as α-amino acids.
Acid and base behaviour

Acid and base behaviour

  • The -COOH group is acidic and can react with bases by donating a proton (H+).
  • The -NH2 group is basic and can react with acids by accepting a proton (H+).
    • Amino acids are amphoteric because they contain both acidic and basic groups in the same molecule.
Side chain

Side chain

  • An amino acid contains an -R group which is a side chain.
    • This is different for different amino acids.
    • E.g. Alanine has an -R group of -CH3.

The Zwitterion Form

An amino acid can exist in the zwitterion form.

Zwitterion form

Zwitterion form

  • Molecules or ions having separate positively and negatively charged groups are known as zwitterions.
  • An internal acid-base reaction in an amino acid causes the nitrogen of the amine group to accept a proton from the carboxylic acid group.
Zwitterion form

Zwitterion form

  • The zwitterion makes the amino acid have ionic charges.
    • A positive charge is on the protonated nitrogen.
    • A negative charge is on the deprotonated oxygen.
  • The ionic nature of amino acids gives them higher melting points than expected.
pH on the zwitterion

pH on the zwitterion

  • At low pH, the carboxylic acid will not be deprotonated (no charge) and the nitrogen will have accepted a proton (positive charge).
  • At high pH, the amine group will not be protonated (no charge) and the carboxylic acid group will have been deprotonated (negative charge).
  • At an intermediate pH, which depends on the amino acid, the main species present is the zwitterion.
    • This intermediate pH is known as the isoelectric point.
Jump to other topics
1

Physical Chemistry

1.1

Atomic Structure

1.1.1Fundamental Particles1.1.2Isotopes & Mass Number1.1.3Mass Spectrometry1.1.4Electron Shells, Sub-Shells & Orbitals1.1.5Electron Configuration1.1.6Ionisation Energy1.1.7Factors Affecting Ionisation Energies1.1.8Trends of Ionisation1.1.9Specific Impacts on Ionisation Energies1.1.10End of Topic Test - Atomic Structure1.1.11A-A* (AO3/4) - Atomic Structure
1.2

Amount of Substance

1.2.1Relative Masses1.2.2The Mole1.2.3The Ideal Gas Equation1.2.4Empirical & Molecular Formulae1.2.5Balanced Equations1.2.6Percentage Yield1.2.7A-A* (AO3/4) - Percentage Yield1.2.8Atom Economy1.2.9End of Topic Test - Amount of Substance1.2.10A-A* (AO3/4) - Substances & Yield1.2.11Diagnostic Misconceptions - Moles
1.3

Bonding

1.3.1Ionic Bonding1.3.2Covalent & Dative Bonding1.3.3Carbon Structures1.3.4Metallic Bonding1.3.5Physical Properties1.3.6Shapes of Molecules1.3.7Polarity1.3.8Intermolecular Forces1.3.9Intermolecular Forces 21.3.10End of Topic Test - Bonding1.3.11Exam-Style Question - Shape of Molecules1.3.12A-A* (AO3/4) - Bonding1.3.13Diagnostic Misconceptions - Ions1.3.14Diagnostic Misconceptions - Ionic & Covalent1.3.15Diagnostic Misconceptions - Phase Change1.3.16Diagnostic Misconceptions - Boiling1.3.17Diagnostic Misconceptions - Polar Bonds
1.4

Energetics

1.4.1Enthalpy Changes1.4.2Bond Breaking and Making1.4.3Enthalpy Changes: Standard Conditions1.4.4Calorimetry1.4.5Hess' Law1.4.6Bond Enthalpies1.4.7End of Topic Test - Energetics1.4.8Diagnostic Misconceptions - Calorimetry
1.5

Kinetics

1.5.1Collision Theory1.5.2Maxwell-Boltzmann Distribution1.5.3Increasing Rates1.5.4End of Topic Test - Kinetics
1.6

Equilibria

1.6.1Le Chatelier1.6.2Equilibrium Constants1.6.3A-A* (AO3/4) - Energetics, Kinetics, Equilibria1.6.4End of Topic Test - Equilibria1.6.5Diagnostic Misconceptions - Solids
1.7

Redox

1.7.1Redox1.7.2End of Topic Test - Redox
2

Physical Chemistry 2 (A2 Only)

2.1

Thermodynamics (A2 Only)

2.1.1Born-Haber Cycles (A2 Only)2.1.2Born-Haber Cycle Calculations (A2 Only)2.1.3Entropy (A2 Only)2.1.4Free Energy (A2 Only)2.1.5End of Topic Test - Thermodynamics2.1.6A-A* (AO3/4) - Thermodynamics
2.2

Rate Equations (A2 Only)

2.2.1Rate Equations (A2 Only)2.2.2Rate Equations 2 (A2 Only)2.2.3The Arrhenius Equation (A2 Only)2.2.4Experimental Methods for Rates (A2 Only)2.2.5End of Topic Test - Rate Equations2.2.6Exam-Style Question - Rates2.2.7A-A* (AO3/4) - Rate Equations
2.3

The Equilibrium Constant Kp (A2 Only)

2.3.1Properties of Kp (A2 Only)
2.4

Electrochemical Cells (A2 Only)

2.4.1Electrochemical Cells (A2 Only)2.4.2Electrochemical Series (A2 Only)2.4.3Commercial Application (A2 Only)2.4.4End of Topic Test - Kp & Electrochemistry2.4.5A-A* (AO3/4) - Electrochemical Cells2.4.6Diagnostic Misconceptions - Salt Bridges2.4.7Diagnostic Misconceptions - Electrode, Electrolyte
2.5

Acids & Bases (A2 Only)

2.5.1Brønsted-Lowry Acids & Bases (A2 Only)2.5.2pH (A2 Only)2.5.3The Ionic Product of Water (A2 Only)2.5.4Weak Acids & Bases (A2 Only)2.5.5pH Curves & Titrations (A2 Only)2.5.6pH Curves & Titrations 2 (A2 Only)2.5.7Buffer Solutions (A2 Only)2.5.8End of Topic Test - Acids & Bases2.5.9Exam-Style Question - Weak Acids2.5.10A-A* (AO3/4) - Acids & Bases2.5.11Diagnostic Misconceptions - Ammonia is an Alkali2.5.12Diagnostic Misconceptions - Water's Neutrality2.5.13Diagnostic Misconceptions - Concentrate & Strength
3

Inorganic Chemistry

3.1

Periodicity & Trends

3.1.1The Periodic Table3.1.2Trends in the Periodic Table3.1.3End of Topic Test - Periodicity & Trends3.1.4Diagnostic Misconceptions - Atomic Radius
3.2

Group 2

3.2.1Group 2 Chemistry3.2.2End of Topic Test - Group 2
3.3

Group 7

3.3.1Introduction to Halogens3.3.2Reactions of Halogens3.3.3Chlorine & Chlorate(I)3.3.4End of Topic Test - Group 73.3.5Exam-Style Question - Group 73.3.6A-A* (AO3/4) - Periodicity, Group 2 & 7
4

Inorganic Chemistry 2 (A2 Only)

4.1

Period 3 (A2 Only)

4.1.1Period 3 Elements & Oxides (A2 Only)4.1.2Period 3 Oxides (A2 Only)4.1.3End of Topic Test - Period 3
4.2

Transition Metals (A2 Only)

4.2.1General Properties (A2 Only)4.2.2Substitution Reactions (A2 Only)4.2.3Shapes of Complex Ions (A2 Only)4.2.4Colours of Ions (A2 Only)4.2.5Variable Oxidation States (A2 Only)4.2.6Titrations (A2 Only)4.2.7Homogeneous Catalysts (A2 Only)4.2.8Heterogeneous Catalysts (A2 Only)4.2.9End of Topic Test - Transition Metals4.2.10A-A* (AO3/4) - Transition Metals
4.3

Reactions of Ions in Aqueous Solutions (A2 Only)

4.3.1Acidity (A2 Only)4.3.2Identification (A2 Only)4.3.3End of Topic Test - Reactions of Ions in Solution
5

Organic Chemistry 1

5.1

Introduction

5.1.1Naming Conventions5.1.2Mechanism5.1.3Isomerism5.1.4End of Topic Test - Introduction to Organic Chem
5.2

Alkanes

5.2.1Fractional Distillation5.2.2Cracking5.2.3Combustion5.2.4Chlorination5.2.5End of Topic Test - Alkanes
5.3

Halogenoalkanes

5.3.1Substitution Reactions5.3.2Elimination Reactions5.3.3Ozone Depletion5.3.4End of Topic Test - Halogenoalkanes
5.4

Alkenes

5.4.1Introduction to Alkenes5.4.2Reactions of Alkenes5.4.3Polymerisation Reactions5.4.4Properties of Polymers5.4.5End of Topic Test - Alkenes
5.5

Alcohols

5.5.1Production of Alcohols5.5.2Oxidation of Alcohols5.5.3Oxidation of Alcohols - 25.5.4Elimination Reactions5.5.5End of Topic Test - Alcohols5.5.6Exam-Style Question - Alcohols
5.6

Organic Analysis

5.6.1Reactions5.6.2Reactions 25.6.3Mass Spectrometry5.6.4Infrared Spectroscopy5.6.5End of Topic Test - Organic Analysis
5.7

A-A* (AO3/4) - Organic 1

5.7.1A-A* (AO3/4) - Organic 1
6

Organic Chemistry 2 (A2 Only)

6.1

Optical Isomerism (A2 Only)

6.1.1Optical Isomerism (A2 Only)6.1.2End of Topic Test - Optical Isomerism
6.2

Aldehydes & Ketones (A2 Only)

6.2.1Aldehydes & Ketones (A2 Only)6.2.2End of Topic Test - Aldehydes & Ketones
6.3

Carboxylic Acids & Esters (A2 Only)

6.3.1Acids & Esters (A2 Only)6.3.2Acylation (A2 Only)6.3.3End of Topic Test - Carboxylic Acids & Esters
6.4

Aromatic Chemistry (A2 Only)

6.4.1Structure & Reactivity (A2 Only)6.4.2Reactions of Benzene (A2 Only)6.4.3End of Topic Test - Aromatic Chemistry
6.5

Amines (A2 Only)

6.5.1Nature & Preparation of Amines (A2 Only)6.5.2Basicity & Nucleophilicity (A2 Only)6.5.3End of Topic Test - Amines
6.6

Polymers (A2 Only)

6.6.1Condensation Polymers (A2 Only)6.6.2Biodegradability (A2 Only)
6.7

Biological Organic (A2 Only)

6.7.1Amino Acids (A2 Only)6.7.2Proteins (A2 Only)6.7.3DNA (A2 Only)6.7.4Anti-Cancer Drugs (A2 Only)6.7.5End of Topic Test - Biological Organic
6.8

Organic Synthesis (A2 Only)

6.8.1Organic Synthesis (A2 Only)6.8.2Examples of Synthetic Routes (A2 Only)6.8.3End of Topic Test - Polymers & Organic Synthesis
6.9

NMR Spectroscopy (A2 Only)

6.9.1Understanding NMR (A2 Only)6.9.2Carbon-13 NMR (A2 Only)6.9.3Hydrogen-1 NMR (A2 Only)6.9.4Hydrogen-1 NMR 2 (A2 Only)6.9.5End of Topic Test - NMR
6.10

Chromatography (A2 Only)

6.10.1Overview of Chromatography (A2 Only)6.10.2Thin-Layer Chromatography (A2 Only)6.10.3Column Chromatography (A2 Only)6.10.4Gas Chromatography (A2 Only)6.10.5End of Topic Test - Chromatography
6.11

A-A* (AO3/4) - Organic 2

6.11.1A-A* (AO3/4) - Organic 2

Practice questions on Amino Acids (A2 Only)

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  1. 1
    Amino acids contain:Fill in the list
  2. 2
    All amino acids have the same two functional groups. So what is different about the different types of α-amino acids?Multiple choice
  3. 3
    In the zwitterion form:Fill in the list
  4. 4
    Zwitterion form is changed by which of the following?Multiple choice
  5. 5
    PH on the Zwitterion:Fill in the list
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Biodegradability (A2 Only)

Proteins (A2 Only)