Mass Spectrometry Analysis

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Using a Mass Spectrometer to Identify Molecules

Once a sample has passed through the mass spectrometer, we can analyse the data to identify the molecule.

Mass spectrometry

Mass spectrometry is a technique used to work out:

The relative isotopic abundance.
Atomic and molecular mass.
The structure of a compound.

Spectrum produced

When the sample has passed through the mass spectrometer, a spectrum is produced by the spectrometer.
On this spectrum:
- The x-axis is mass/charge ratio.
- The y-axis is % abundance.

Main peak

The spectrum produces lots of peaks, but the most important is the molecular ion peak.
- This is the peak of the greatest mass/charge ratio.
This represents the mass/charge value of the molecule we are analyzing.

Isotopes

Smaller peaks will cluster around the molecular ion peak.
- These are from the same molecules but with different isotopes in them.
- The isotopic molecules have different masses and so different mass/charge ratio values.

Fragmentation

Any smaller and significantly lighter peaks in the spectrum are because of fragmentation.
- The molecule can fragment in the spectrometer.

Calculating Relative Atomic Mass

Once we have the mass spectrum, we can calculate the relative atomic mass.

Relative atomic mass

Relative atomic mass is the average weighted mass of an atom relative to carbon-12.
The key word to look at here is "average".
This is because its value is calculated taking into account all of its isotopes and their relative abundances.

Using the spectrum

We can use the spectrum to view all the different isotopes and their relative abundance.
Isotopic mass is along the x-axis.
Isotopic abundance is along the y-axis.

Calculation

We can then calculate the relative atomic mass since we have all of the isotopic masses and their relative abundances.
It is easiest to show how to carry out the calculation with an example - see the next slide.

Example - boron

This is the mass spectrum of a sample of elemental boron.
Boron has two isotopes, ¹⁰B and ¹¹B.
You can see from the spectrum that approximately 20% of the boron is ¹⁰B and 80% is ¹¹B.
You can use this to work out the relative atomic mass:
- 80% × 11 + 20% × 10 = 10.8

1Physical Chemistry

1.1Atoms, Molecules & Stoichiometry

1.1.1Relative Masses

1.1.2The Mole

1.1.3Mass Spectrometry

1.1.4Empirical & Molecular Formulae

1.1.5Balanced Equations

1.1.6Molar Volume

1.1.7End of Topic Test - Amount of Substance

1.2Atomic Structure

1.2.1Fundamental Particles

1.2.2Isotopes & Mass Number

1.2.3Electron Shells, Sub-Shells & Orbitals

1.2.4Electron Configuration

1.2.5Ionisation Energy

1.2.6Factors Affecting Ionisation Energies

1.2.7Trends of Ionisation

1.2.8Specific Impacts on Ionisation Energies

1.2.9Electron Affinity

1.2.10End of Topic Test - Atomic Structure

1.2.11A-A* (AO2/3) - Atomic Structure

1.3Chemical Bonding

1.3.1Ionic Bonding

1.3.2Covalent & Dative Bonding

1.3.3Shapes of Molecules

1.3.4Intermolecular Forces

1.3.5Intermolecular Forces 2

1.3.6Electronegativity

1.3.7Bond Length, Bond Energy, & Bond Polarity

1.3.8Metallic Bonding

1.3.9Physical Properties

1.3.10End of Topic Test - Bonding

1.3.11A-A* (AO2/3) - Bonding

1.4States of Matter

1.4.1Simple Covalent Molecules

1.4.2The Ideal Gas Equation

1.4.3States of Matter

1.4.4Particle Diagrams

1.4.5The Liquid State

1.4.6Giant Ionic Lattices

1.4.7Giant Metallic Lattices

1.4.8Giant Covalent Structures

1.4.9Graphene & Fullerene

1.4.10Recycling

1.5Chemical Energetics

1.5.1Calorimetry

1.5.2Bond Enthalpies

1.5.3Enthalpy Changes

1.5.4Hess' Law

1.5.5Born-Haber Cycles

1.5.6Born-Haber Cycle Calculations

1.5.7Entropy

1.5.8Free Energy

1.5.9End of Topic Test - Energetics

1.6Electrochemistry

1.6.1Electrochemical Cells

1.6.2Electrochemical Series

1.6.3Commercial Application

1.6.4Nernst Equation

1.6.5Redox

1.7Equilibria

1.7.1Dynamic Equilibrium & Le Chatelier

1.7.2Kc

1.7.3Kp

1.7.4pH

1.7.5The Ionic Product of Water

1.7.6Weak Acids & Bases

1.7.7Introduction to Solubility Equilibria

1.7.8Solubility Equilibria Calculations

1.7.9Free Energy of Dissolution

1.7.10pH and Solubility

1.7.11Common-Ion Effect

1.7.12End of Topic Test - Kp & Electrochemistry

1.7.13A-A* (AO2/3) - Electrochemical Cells

1.8Partition Coefficient

1.8.1Kpc

1.9Reaction Kinetics

1.9.1Collision Theory

1.9.2Orders, Rate Constants & Equations

1.9.3Rate Graphs

1.9.4Rate Determining Step

1.9.5Maxwell-Boltzmann Distribution

1.9.6Catalysts

1.9.7Homogeneous Catalysts

1.9.8Heterogeneous Catalysts

1.9.9End of Topic Test - Kinetics

1.9.10End of Topic Test - Rate Equations

1.9.11A-A* (AO2/3) - Rate Equations

2Inorganic Chemistry

2.1The Periodic Table

2.1.1The Periodic Table

2.1.2Trends in the Periodic Table

2.1.3End of Topic Test - Periodicity & Trends

2.1.4Ceramics

2.1.5Period 3 Elements & Oxides

2.1.6Period 3 Oxides

2.1.7End of Topic Test - Period 3

2.2Group 2

2.2.1Group 2 Chemistry

2.3Group 17

2.3.1Introduction to Halogens

2.3.2Reactions of Halogens

2.3.3Chlorine & Chlorate(I)

2.3.4End of Topic Test - Group 17

2.3.5A-A* (AO2/3) - Periodicity, Group 2 & 17

2.4Transition Metals

2.4.1General Properties

2.4.2Titrations

2.4.3Shapes of Complex Ions

2.4.4Variable Oxidation States

2.4.5Ligands

2.4.6Colours of Ions

2.4.7Stereoisomerism of Complex Ions

2.4.8Cisplatin

2.4.9Ligand Substitutions & Kstab

2.4.10End of Topic Test - Transition Metals

2.4.11A-A* (AO2/3) - Transition Metals

2.5Nitrogen & Sulfur

2.5.1Nitrogen & Ammonia

2.5.2Formulated vs Manure Fertilisers

2.5.3Nitrogen Containing Fertilisers

2.5.4Fertilizers & Eutrophication

2.5.5Common Atmospheric Pollutants & Their Properties

2.5.6Catalytic Converters

2.5.7Atmospheric Oxides

3Organic Chemistry & Analysis

3.1Introduction to Organic Chemistry

3.1.1Naming Conventions

3.1.2Mechanism

3.1.3Isomerism

3.1.4End of Topic Test - Introduction to Organic Chem

3.2Hydrocarbons

3.2.1Fractional Distillation

3.2.2Cracking

3.2.3Combustion

3.2.4Chlorination

3.2.5End of Topic Test - Alkanes

3.2.6Introduction to Alkenes

3.2.7Reactions of Alkenes

3.2.8Polymerisation Reactions

3.2.9End of Topic Test - Alkenes

3.2.10Arenes

3.2.11Evidence for Structure of Arenes

3.2.12Reactions of Benzene

3.2.13End of Topic Test -Arenes

3.3Halogen Derivatives

3.3.1Properties of Haloalkanes

3.3.2Substitution Reactions of Haloalkanes

3.3.3Environmental Impacts of Haloalkanes

3.3.4End of Topic Test - Halogenoalkanes

3.4Hydroxy Compounds

3.4.1Types of Alcohol

3.4.2Oxidation 1

3.4.3Oxidation 2

3.4.4Elimination

3.4.5Acids & Esters

3.4.6Acyl Chlorides & Acylation

3.4.7Phenols & Their Reactions

3.4.8End of Topic Test - Alcohols

3.5Carbonyl Compounds

3.5.1Carbonyls

3.5.2Hydrogen Bonding & Carbonyls

3.5.3Aldehydes & Ketones

3.5.4Tri-Iodomethane Reaction

3.5.5End of Topic Test -Carbonyls

3.6Carboxylic Acids & Derivatives

3.6.1Properties of Carboxylic Acids

3.6.2Esters

3.6.3Acyl Chlorides

3.6.4End of Topic Test - Carboxylic Acids

3.7Nitrogen Compounds

3.7.1Nature & Preparation of Amines

3.7.2Basicity & Nucleophilicity

3.7.3Amides

3.7.4Reactions of Amino Acids

3.7.5Amino Acids

3.8Polymerisation

3.8.1Properties of Addition Polymers

3.8.2Condensation Polymerisation

3.8.3Effects of Side-Chains on Polymers

3.8.4Hydrolysis of Ester & Amide Groups

3.8.5Proteins

3.8.6DNA

3.8.7Adhesive & Conducting Polymers

3.8.8End of Topic Test - Amines & Proteins

3.9Analytical Techniques

3.9.1Chromatography

3.9.2High-Performance Liquid Chromatography

3.9.3Gas Chromatography

3.9.4IR Spectroscopy

3.9.5Uses of IR Spectroscopy

3.9.6Mass Spectrometry

3.9.7Mass Spectrometry Analysis

3.9.8Nuclear Magnetic Resonance

3.9.9Carbon-13 NMR

3.9.10Proton NMR I

3.9.11Proton NMR II

3.9.12End of Topic Test - Analytical Techniques

3.9.13A-A* (AO2/3) - Analytical Techniques

3.10Organic Synthesis

3.10.1Chirality & Drug Synthesis

3.10.2Organic Synthesis

3.10.3Examples of Synthetic Routes

3.10.4End of Topic Test - Organic Synthesis

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